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Table 6 Annotation function information for rs12517396, rs16901825, and rs10512851

From: Evaluation of FGF10 as a candidate gene for high myopia in a Han Chinese population

SNP

LD-r2

LD-D′

ORF

Score of Regulome BD

Function

Binding protein

Regulatory motifs altered

rs12517396

1

1

no

6

Histone modification

no

Bbx, Gfi1, HDAC2, HMG-IY, Hbp1, Nanog, Nkx6, SOX

rs10462070

1

1

no

no date

no

no

AIRE, Ets-disc1, Hnf6, PlZF, pou3f2

rs16901825

0.95

0.86

no

3a

Histone modification

STAT3

ATF3

rs10512851

0.95

0.86

no

5

Chromatin structure

STAT3, CEBPB

Foxp1

  1. Scores of Regulome DB have different meanings. 3a means this SNP is likely to be located in a trans factor binding site and deoxyribonuclease peak area. Five means this SNP is less likely to be located in a trans factor binding site or deoxyribonuclease peak area. Six means others
  2. SNP = single nucleotide polymorphisms, ORF = open reading frame